Appendix A - WRITING SCIENTIFIC PAPERS IN BIOLOGY
In most courses in the Biology Department, you will be asked to write papers that describe projects you have performed in the laboratory. Like papers in non-science courses, we expect them to be well-written, creative and thoughtful. Unlike papers in other courses, we expect them to conform to a format common to biological journals, which is described below. It is critical that you understand the details of this format, and particularly that you do NOT confuse these papers with "lab reports" required by other science courses at Grinnell.
The following describes how your paper should be organized. However, this doesnt mean that you should write the paper in this order! We suggest writing the paper in this order: (1) Materials and Methods (2) Results, (3) Discussion, (4) Introduction and (5) Title.
In each section below are listed some "fatal flaws." If we find these in your paper, well return it for a rewrite, with significant penalty.
The title tells what the paper is about. Under it should be your name and "professional address," which in this case is the specific lecture and laboratory sections in which you are enrolled. For this course, it is sufficient to put this at the top of the first page, although other professors may ask you to have a separate title page (We dont in order to save paper).
A title should be informative, specific and concise. Since you are not writing a murder mystery, it is all right to tell the "ending" in the title. It is often this information that helps a reader decide if the paper is something he/she wants to read. Here are few examples that illustrate this:
The introduction should briefly explain why the research was done, relating this research to other relevant work and giving the reasons for choosing the hypothesis to be tested. A good way to organize the introduction is to begin with the general and proceed to the specific. Assume that the reader is at least moderately familiar with the general subject of the paper. However, unless you are studying a model organism (e.g., Drosophila, Arabadopsis, E. coli etc.), it is important to describe enough aspects of its natural history that the reader can appreciate why it was chosen for the study. A good introduction will mention the major issues that will be considered in the Discussion section, and thats why we suggest writing it after finishing the other sections.
Fatal flaw: Dont start the paper with the phrase: "The goal of this experiment was . . . " This is not a general statement about the subject.
Materials and Methods
This section should carefully explain how the research was done. Organize the sections logically, using subheadings if there are more than several paragraphs. Include all materials used, the exact conditions employed, and how you gathered the data. You may cite the lab manual (or another source) for a common technique. Heres an example:
If you develop your own technique, you should explain it in sufficient detail that another person could replicate your work. Tell exactly what materials you used (composition of solutions, media, etc.) and describe the procedures precisely. Commonly used statistical tests generally need no explanation or citation.
Fatal flaw: Dont present your materials and methods as a list. Write in complete sentences and organized paragraphs.
The results section should summarize, but not interpret, the results obtained. One good way to approach the writing of the Results section is to develop a set of questions about the data you gathered. Dont use any questions that begin with "Why" -- these necessarily involve interpretation, so they should be addressed in the Discussion section. Write your Results section by answering each of these questions in a logical order. Refer to Figures and Tables as you describe the results.
Figures and tables frequently will help the reader to understand more easily than a written description. They should not duplicate text, and text should only tell the reader the major points to be noted on the graphs or tables (that is, should tell the reader what you think is particularly important about the data presented). Obviously the same data should not be presented in two different forms, so decide which form helps you tell your reader what you want him/her to know. Graphs of any kind, as well as other pictorial materials, are referred to as "Figures" in the text, and are numbered. Tables are called "Tables" in the text, and are numbered separately from figures. Each figure or table should be on a separate page. They may either follow the first reference to them in the text, or all may be collected at the end of the paper. All figures and tables must be "called out" or referred to before they are explained in the text.
Imagine that you have done an experiment that compares growth rates of Brassica under two different fertilizer treatments. The following is an example of a BAD GRAPH:
This graph makes poor use of space (note the big empty area). More seriously, the reader cant tell from the figure whether the bars are mean values, and whether the difference between them is significant -- there needs to be some indication of the variation within each treatment group, i.e., error bars. Note as well that the Y axis has no units and the figure legend is not explanatory.
Heres a much better version of this graph:
The discussion should interpret and explain the meaning of your results and usually proceeds from the specific to the general. Begin with a summary of your results in a sentence or two. Remind the reader of important trends, etc. Then relate your results to your own initial hypothesis, arguing for a particular interpretation of your data. Dont forget that "negative" results can be important too, since they may suggest that your hypothesis was incorrect (After all, it is just possible that you did everything perfectly!). Relate your results as well to other papers or published hypotheses if appropriate.
The discussion should end with a summary - the "take home lesson" that you want your reader to remember about your work. It may also raise further questions for study. However, if you end the discussion with the phrase, "but of course more work needs to be done," we will lower your grade! Please let me know what kind of work would be most informative and why.
Acknowledgments are used to thank any persons who contributed any significant help during the study. Such contributions include, but are by no means limited to, help in experimental design, collection of data, preparation of graphs, drawings or the manuscript, critiquing a draft of the manuscript or in financial or physical support of the work. Your partners in a group project must certainly be acknowledged!
The references list only the papers or other publications that were directly referred to in your paper; they are not a bibliography. References should be cited in one of two ways in the text: (1) Mention the authors' names as part of your sentence followed by the year of publication in parentheses; (2) Place authors' names and the year of publication in parentheses following ideas or results from the study. See examples below:
(1) "Brown and Wilson (1992) performed a set of experiments demonstrating variability in host specialization . . . "
(2) A phylogenetic tree of the yucca moth family indicates the important role of host-plant association in the evolution of this group (Brown et al. 1994)."
The following are examples of how articles should appear in the References section). Articles should be listed in this section alphabetically according to the first author.
Journal article: Brown, J.M. and D.S. Wilson. 1992. Local specialization on sympatric hosts: phoretic mites on carrion beetles. Ecology 73:463-478.
Book: Brown, J.M. 1999. How I became rich in academia -- a fantasy. Harper and Row, New York, NY.
Evaluation of Papers
All papers will be reviewed as if we were doing it for a regular journal. The evaluations will be given as follows:
"Accepted" - a paper that could be published without revisions (an A paper, 45-50 pts.)
"Accepted with minor revisions" - a paper that could be published with attention to a few comments (a B paper, 40-44 pts.) . Criticisms may include
a minor error in way data are presented,
a minor error in data analysis,
a lack of clarity, especially in the discussion,
awkward or improper sentence construction.
"Requires major revisions" - a paper that is not publishable without extensive work (a C or D paper, 30-39 pts.). Criticisms may be
inadequate data presentation and/or analysis, which leads to
lack of creative thought in discussion,
poor writing style or lack of proofreading and spell checking.
"Rejected" -- must be rewritten to receive a grade. Due to
We accept late papers with a penalty of 5 pts/24 hours, or portion thereof. No penalties will be assessed with evidence of illness from the Health Center.
(Adapted from Writing Papers in the Biological Sciences (1988) by Victoria E. McMillan, St. Martins Press, N.Y. Grading scheme adapted from Bill Wirtzs handout for Biology 112 , Pomona College)